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Comparison of predicted and known substrate specificities for selected protein kinases

Protein kinase
Predicted optimal heptapeptide substrate sequence
Optimal sequence based on oriented peptide library experiments
Natural Substrates

PKA

(RK)(RS)X(ST)(FLIM)(AVIS)(ILMKS)

(RH)(RKH)(RV)S(IFM)(IVF)(FIM)

(RK)(RK)(RK)(ST)(VLM)(SK)(PTSGN)

PKCa

(RK)(RKMST)X(ST)(FLIM)(RK)(FVILKRS)

(RK)(KQR)GS(FMIV)(KRF)(KFR)

(RKF)(RKTS)(LGSR)(ST)(LFV)(RKP)(RKSG)

PKCz

(RK)(RQM)X(ST)(FLIM)(AVI)(VFLK)

R(QKY)(GKM)S(FM)(FMA)(YK)

RQGSFF-

CaMKII

(RK)(QMLISTK)X(ST)(FLIM)(DES)(LIMKS)

(RQ)(QM)(QMK)S(FIML)(DEI)(LIMK)

(RK)(QRTIL)(AGS)(ST)(VLIMF)(AS)(GEQ)

PKCm

(RK)(QMTAS)X(ST)(VILMF)(AVI)(FLIMK)

R(QKEM)(MLK)S(VML)(AV)(FY)

RTASVAF

PHK

(RK)(QFMS)X(ST)(FLIM)(LIM)(LIM)

(RK)(MRQF)(MFL)S(FIM)(LI)(FLI)

(RK)(SQT)(GIL)(ST)(FI)(YRS)(EGS)

NIMA

(RF)RX(ST)(RR)(FLIM)

(FLM)(RK)(RK)S(RIVM)(RIMV)(MIFV)

FRSSIRR

CK2

(EDSQ)(EDHQ)X(ST)E(DERK)(SQNE)

(DE)(ED)(ED)S(EDA)(EA)(EA)

(DESP)(EDAV)(ES)(ST)(DES)(DE)(ED)

CDK2

(QH)(PMH)X(ST)P(RK)(RKHML)

H(PH)RSPRK

PKG

(RK)RX(ST)(FLI)(EQSN)(FLKST)

RKKSLAM

R(RK)(PR)(ST)(PR)(AS)(ETP)

PKCg

(RK)(RKM)X(ST)(FLIM)(RK)(FVLKR)

R(KRQ)(GK)S(FKM)(KR)(RK)

PKCd

(RK)(RKM)X(ST)(FLM)(RK)(FVLKR)

R(KRQ)(GA)S(FMV)(FKM)Y

MRQSVAV

AKT

(RK)(RKST)X(ST)(FLIM)(STNA)(VFLK)

RT(YFG)S(FM)(GTSRN)

R(TSR)(GST)(ST)(FIW)(PSA)(LRP)

Slk1 (Bck1)

(QNSA)(VPAR)X(ST)(LIM)(FLIA)(FLIK)

(RK)(FR)(GR)S(LIFM)(RIMF)(RFM)

(LA)(AV)()(ST)(FL)(TA)(TG)

Chk1

(RK)(FLA)X(ST)(LIM)(VILM)(FLIM)

R(YMP)(RF)S(FINM)(SA)(IFL)

RSPSMPE

Chk2

(RK)(ITS)X(ST)(FLID)(FL)(FLIK)

R(YKA)(YE)S(FI)(FIR)(YRF)

(RP)(STI)(FHKP)(ST)(DFM)(LVPS)(WLKE)

CKIg

(QNDA)(ED)X(ST)(LMI)(LI)(IFL)

E(TAG)GSI(IYF)(FY)

(SRN)(EST)(LES)(ST)(VIK)(ITY)(SREI)

CKId

(QNDA)(ED)X(ST)(LMI)(LI)F

E(TAG)GSI(IFY)(IGY)

(SRN)(EST)(LES)(ST)(VIK)(ITY)(SREI)

ERK1

(RKFL)(PVH)X(ST)P(PFLI)(RKHML)

(GPE)(PLI)(LMP)SP(GPF)(PFG)

(PVTL)(PV)L(ST)P(RSP)(PRKFG)

CDK5

(EQHS)(PKH)X(ST)P(RK)(RKHML)

H(HP)(KG)SP(KR)(HRK)

(EG)(TVH)(KA)(ST)P(VPE)K

bARK

(KRQEDN)(QMSTpY)X(ST)(DESN)(DESN)(KRQED)

-

(NTK)(NVT)(DpS)(ST)(ENDQ)(EDNG)(RQEDN)

S6K(1)

(RK)(RK)X(ST)(VLTIM)(QDNES)(LFKSA)

-

RRQSLIE

S6K(2)

R(IMT)X(ST)(ILM)(EDS)(LMK)

-

R(LTA)(SL)(ST)(LVH)(SR)(SA)

CaMKI

(RK)(QMITSK)X(ST)(VL.IM)(QSN)(KRQ)

-

RRLSDSN

AMPK

(RK)(RQMS)X(ST)V(AGVLF)(QNRKH)

-

(HRNS)(SRVN)(MAV)(ST)(FVEKG)(ALIS)(SNHDA)